Numbering Schemes

Five numbering schemes are now implemented within abYsis:

CDR/Framework Scheme

Five CDR definitions are now supported:

Note
Chothia region definition for CDR-H1 loop, and Contact definition for CDR-L1 loop, have a complex specification when using the Kabat numbering scheme. However, for a given sequence, the CDR regions are ultimately independent of the numbering scheme. Internally, abYsis prioritises the Chothia numbering scheme to delineate regions.